J3_8B2L_036
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- (OMG)UC*GCCUAACGAUCC*(OMG)GUGUC
- Length
- 21 nucleotides
- Bulged bases
- 8B2L|1|A3|C|2763, 8B2L|1|A3|U|2800
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8B2L_036 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0622
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8B2L|1|A3|OMG|2654
8B2L|1|A3|U|2655
8B2L|1|A3|C|2656
*
8B2L|1|A3|G|2757
8B2L|1|A3|C|2758
8B2L|1|A3|C|2759
8B2L|1|A3|U|2760
8B2L|1|A3|A|2761
8B2L|1|A3|A|2762
8B2L|1|A3|C|2763
8B2L|1|A3|G|2764
8B2L|1|A3|A|2765
8B2L|1|A3|U|2766
8B2L|1|A3|C|2767
8B2L|1|A3|C|2768
*
8B2L|1|A3|OMG|2796
8B2L|1|A3|G|2797
8B2L|1|A3|U|2798
8B2L|1|A3|G|2799
8B2L|1|A3|U|2800
8B2L|1|A3|C|2801
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain G3
- 60S ribosomal protein L18-2-like
- Chain J3
- 60S ribosomal protein L21-1-like
- Chain W2
- Transfer RNA; tRNA
- Chain Z3
- 60S ribosomal protein L44
- Chain f3
- uL15 (60S ribosomal protein L27a)
Coloring options: