J3_8B2L_041

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AGAUUAAG*CGCGC(A2M)AAU*(A2M)G(PSU)

Length

20 nucleotides

Bulged bases

8B2L|1|h1|A|47

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8B2L_041 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.1372

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.2

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8B2L|1|h1|A|41
8B2L|1|h1|G|42
8B2L|1|h1|A|43
8B2L|1|h1|U|44
8B2L|1|h1|U|45
8B2L|1|h1|A|46
8B2L|1|h1|A|47
8B2L|1|h1|G|48
*
8B2L|1|h1|C|435
8B2L|1|h1|G|436
8B2L|1|h1|C|437
8B2L|1|h1|G|438
8B2L|1|h1|C|439
8B2L|1|h1|A2M|440
8B2L|1|h1|A|441
8B2L|1|h1|A|442
8B2L|1|h1|U|443
*
8B2L|1|h1|A2M|468
8B2L|1|h1|G|469
8B2L|1|h1|PSU|470

Current chains

Chain h1

18S rRNA

Nearby chains

Chain P1

40S ribosomal protein S8

Chain T1

40S ribosomal protein S23

Chain b1

40S ribosomal protein S9-2-like