J3_8B2L_045

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCAG*CUAGUAA*(PSU)GACUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8B2L_045 not in the Motif Atlas

Homologous match to J3_8P9A_076

Geometric discrepancy: 0.1534

The information below is about J3_8P9A_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.2

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

6

Unit IDs

8B2L|1|h1|C|1164
8B2L|1|h1|C|1165
8B2L|1|h1|A|1166
8B2L|1|h1|G|1167
*
8B2L|1|h1|C|1587
8B2L|1|h1|U|1588
8B2L|1|h1|A|1589
8B2L|1|h1|G|1590
8B2L|1|h1|U|1591
8B2L|1|h1|A|1592
8B2L|1|h1|A|1593
*
8B2L|1|h1|PSU|1615
8B2L|1|h1|G|1616
8B2L|1|h1|A|1617
8B2L|1|h1|C|1618
8B2L|1|h1|U|1619
8B2L|1|h1|A|1620
8B2L|1|h1|C|1621
8B2L|1|h1|G|1622

Current chains

Chain h1

18S rRNA

Nearby chains

Chain L1

40S ribosomal protein S28

Chain d1

40S ribosomal protein S5-like

Chain f1

40S ribosomal protein S16