J3_8B2L_049

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UG*UG(PSU)C*GUUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8B2L_049 not in the Motif Atlas

Homologous match to J3_8P9A_081

Geometric discrepancy: 0.235

The information below is about J3_8P9A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.5

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8B2L|1|h1|U|1296
8B2L|1|h1|G|1297
*
8B2L|1|h1|U|1306
8B2L|1|h1|G|1307
8B2L|1|h1|PSU|1308
8B2L|1|h1|C|1309
*
8B2L|1|h1|G|1321
8B2L|1|h1|U|1322
8B2L|1|h1|U|1323
8B2L|1|h1|A|1324
8B2L|1|h1|A|1325

Current chains

Chain h1

18S rRNA

Nearby chains

Chain D1

40S ribosomal protein S17-like

Chain Z1

40S ribosomal protein SA

Chain c1

40S ribosomal protein S2-3-like