J3_8B5L_006

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

8B5L|1|5|A|2239

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8B5L_006 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.0884

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

8B5L|1|5|C|2236
8B5L|1|5|G|2237
8B5L|1|5|A|2238
8B5L|1|5|A|2239
8B5L|1|5|G|2240
8B5L|1|5|U|2241
8B5L|1|5|G|2242
*
8B5L|1|5|C|2648
8B5L|1|5|A|2649
8B5L|1|5|A|2650
*
8B5L|1|5|U|2662
8B5L|1|5|C|2663
8B5L|1|5|U|2664
8B5L|1|5|G|2665

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

Ribosomal protein L19

Chain g

60S ribosomal protein L34