J3_8B5L_008
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- UCGGUC*GGAGU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8B5L_008 not in the Motif Atlas
- Homologous match to J3_5TBW_010
- Geometric discrepancy: 0.1504
- The information below is about J3_5TBW_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_70383.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
8B5L|1|5|U|2283
8B5L|1|5|C|2284
8B5L|1|5|G|2285
8B5L|1|5|G|2286
8B5L|1|5|U|2287
8B5L|1|5|C|2288
*
8B5L|1|5|G|2358
8B5L|1|5|G|2359
8B5L|1|5|A|2360
8B5L|1|5|G|2361
8B5L|1|5|U|2362
*
8B5L|1|5|A|2379
8B5L|1|5|A|2380
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain X
- Ribosomal_L23eN domain-containing protein
- Chain g
- 60S ribosomal protein L34
- Chain k
- 60S ribosomal protein L38
- Chain l
- 60S ribosomal protein L39-like
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