J3_8B5L_009
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- AGAUG*CAGU*AGGGUGUAAAU
- Length
- 20 nucleotides
- Bulged bases
- 8B5L|1|5|U|2606
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8B5L|1|5|A|2394
8B5L|1|5|G|2395
8B5L|1|5|A|2396
8B5L|1|5|U|2397
8B5L|1|5|G|2398
*
8B5L|1|5|C|2415
8B5L|1|5|A|2416
8B5L|1|5|G|2417
8B5L|1|5|U|2418
*
8B5L|1|5|A|2600
8B5L|1|5|G|2601
8B5L|1|5|G|2602
8B5L|1|5|G|2603
8B5L|1|5|U|2604
8B5L|1|5|G|2605
8B5L|1|5|U|2606
8B5L|1|5|A|2607
8B5L|1|5|A|2608
8B5L|1|5|A|2609
8B5L|1|5|U|2610
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain Z
- 60S ribosomal protein L27
- Chain t
- Signal sequence receptor subunit 3
Coloring options: