J3_8B5L_020
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 8B5L|1|5|G|409, 8B5L|1|5|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8B5L_020 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.294
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8B5L|1|5|U|380
8B5L|1|5|U|381
8B5L|1|5|G|382
8B5L|1|5|A|383
8B5L|1|5|A|384
8B5L|1|5|A|385
8B5L|1|5|A|386
8B5L|1|5|G|387
8B5L|1|5|A|388
8B5L|1|5|A|389
8B5L|1|5|C|390
*
8B5L|1|5|G|401
8B5L|1|5|A|402
8B5L|1|5|G|403
8B5L|1|5|U|404
8B5L|1|5|U|405
8B5L|1|5|C|406
8B5L|1|5|A|407
8B5L|1|5|A|408
8B5L|1|5|G|409
8B5L|1|5|A|410
8B5L|1|5|G|411
8B5L|1|5|G|412
8B5L|1|5|G|413
8B5L|1|5|C|414
8B5L|1|5|G|415
*
8B5L|1|8|C|19
8B5L|1|8|A|20
Current chains
- Chain 5
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain P
- 60S ribosomal protein L17
- Chain Y
- Ribosomal protein L26
- Chain l
- 60S ribosomal protein L39-like
- Chain s
- Protein transport protein Sec61 subunit alpha isoform 1
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