J3_8B5L_024
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- AGAAG*CC*GAAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8B5L_024 not in the Motif Atlas
- Homologous match to J3_8P9A_058
- Geometric discrepancy: 0.1457
- The information below is about J3_8P9A_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08594.1
- Basepair signature
- cWW-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8B5L|1|5|A|2441
8B5L|1|5|G|2442
8B5L|1|5|A|2443
8B5L|1|5|A|2444
8B5L|1|5|G|2445
*
8B5L|1|5|C|2580
8B5L|1|5|C|2581
*
8B5L|1|5|G|2585
8B5L|1|5|A|2586
8B5L|1|5|A|2587
8B5L|1|5|A|2588
8B5L|1|5|A|2589
8B5L|1|5|U|2590
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain g
- 60S ribosomal protein L34
- Chain p
- 60S ribosomal protein L37a
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