J3_8B5L_025
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- GUC*GCCUCACGAUCC*(OMG)GUGUC
- Length
- 21 nucleotides
- Bulged bases
- 8B5L|1|5|C|4083, 8B5L|1|5|U|4120
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8B5L_025 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0789
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8B5L|1|5|G|3974
8B5L|1|5|U|3975
8B5L|1|5|C|3976
*
8B5L|1|5|G|4077
8B5L|1|5|C|4078
8B5L|1|5|C|4079
8B5L|1|5|U|4080
8B5L|1|5|C|4081
8B5L|1|5|A|4082
8B5L|1|5|C|4083
8B5L|1|5|G|4084
8B5L|1|5|A|4085
8B5L|1|5|U|4086
8B5L|1|5|C|4087
8B5L|1|5|C|4088
*
8B5L|1|5|OMG|4116
8B5L|1|5|G|4117
8B5L|1|5|U|4118
8B5L|1|5|G|4119
8B5L|1|5|U|4120
8B5L|1|5|C|4121
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain Q
- Ribosomal protein L18
- Chain T
- 60S ribosomal protein L21
- Chain a
- 60S ribosomal protein L27a
- Chain o
- 60S ribosomal protein L36a-like
Coloring options: