J3_8B6C_014
3D structure
- PDB id
- 8B6C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.79 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 8B6C|1|5|A|4026
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8B6C_014 not in the Motif Atlas
- Homologous match to J3_5TBW_013
- Geometric discrepancy: 0.0935
- The information below is about J3_5TBW_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8B6C|1|5|C|3987
8B6C|1|5|U|3988
8B6C|1|5|C|3989
*
8B6C|1|5|G|4013
8B6C|1|5|A|4014
8B6C|1|5|G|4015
*
8B6C|1|5|C|4024
8B6C|1|5|A|4025
8B6C|1|5|A|4026
8B6C|1|5|A|4027
8B6C|1|5|A|4028
8B6C|1|5|G|4029
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain D
- Ribosomal_L18_c domain-containing protein
- Chain J
- 60S ribosomal protein L11
- Chain T
- 60S ribosomal protein L21
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