J3_8B7Y_004

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8B7Y|1|C|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8B7Y_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0675

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8B7Y|1|C|C|826
8B7Y|1|C|U|827
8B7Y|1|C|U|828
8B7Y|1|C|G|829
*
8B7Y|1|C|C|857
8B7Y|1|C|G|858
8B7Y|1|C|G|859
8B7Y|1|C|A|860
8B7Y|1|C|G|861
*
8B7Y|1|C|C|868
8B7Y|1|C|G|869
8B7Y|1|C|U|870
8B7Y|1|C|U|871
8B7Y|1|C|A|872
8B7Y|1|C|A|873
8B7Y|1|C|G|874

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain 5

30S ribosomal protein S21

Chain D

30S ribosomal protein S2

Chain P

30S ribosomal protein S8