J3_8B7Y_013

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

8B7Y|1|C|U|1240, 8B7Y|1|C|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8B7Y_013 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1477

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8B7Y|1|C|C|1237
8B7Y|1|C|A|1238
8B7Y|1|C|A|1239
8B7Y|1|C|U|1240
8B7Y|1|C|G|1241
*
8B7Y|1|C|C|1296
8B7Y|1|C|G|1297
8B7Y|1|C|U|1298
8B7Y|1|C|A|1299
8B7Y|1|C|G|1300
8B7Y|1|C|U|1301
8B7Y|1|C|C|1302
8B7Y|1|C|C|1303
*
8B7Y|1|C|G|1334
8B7Y|1|C|U|1335
8B7Y|1|C|C|1336
8B7Y|1|C|G|1337

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S7

Chain r

30S ribosomal protein S13