J3_8B7Y_028

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

8B7Y|1|C|C|48, 8B7Y|1|C|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8B7Y_028 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.0893

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8B7Y|1|C|G|46
8B7Y|1|C|C|47
8B7Y|1|C|C|48
8B7Y|1|C|U|49
8B7Y|1|C|A|50
8B7Y|1|C|A|51
8B7Y|1|C|C|52
*
8B7Y|1|C|G|359
8B7Y|1|C|G|360
8B7Y|1|C|G|361
8B7Y|1|C|G|362
8B7Y|1|C|A|363
8B7Y|1|C|A|364
8B7Y|1|C|U|365
8B7Y|1|C|A|366
8B7Y|1|C|U|367
*
8B7Y|1|C|A|393
8B7Y|1|C|G|394
8B7Y|1|C|C|395

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S12

Chain u

30S ribosomal protein S16