J3_8BF7_003

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

8BF7|1|0|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BF7_003 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.105

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8BF7|1|0|C|1298
8BF7|1|0|G|1299
8BF7|1|0|G|1300
8BF7|1|0|A|1301
8BF7|1|0|A|1302
8BF7|1|0|G|1303
*
8BF7|1|0|C|1625
8BF7|1|0|A|1626
8BF7|1|0|G|1627
*
8BF7|1|0|C|1639
8BF7|1|0|A|1640
8BF7|1|0|A|1641
8BF7|1|0|G|1642

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains