J3_8BF7_004

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8BF7|1|0|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BF7_004 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.109

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

8BF7|1|0|C|1306
8BF7|1|0|A|1307
8BF7|1|0|A|1308
8BF7|1|0|G|1309
*
8BF7|1|0|C|1605
8BF7|1|0|C|1606
8BF7|1|0|C|1607
8BF7|1|0|A|1608
8BF7|1|0|A|1609
8BF7|1|0|A|1610
8BF7|1|0|C|1611
*
8BF7|1|0|G|1620
8BF7|1|0|U|1621
8BF7|1|0|G|1622

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain c

50S ribosomal protein L34