J3_8BF7_010

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8BF7|1|2|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BF7_010 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1072

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8BF7|1|2|C|826
8BF7|1|2|U|827
8BF7|1|2|U|828
8BF7|1|2|G|829
*
8BF7|1|2|C|857
8BF7|1|2|G|858
8BF7|1|2|G|859
8BF7|1|2|A|860
8BF7|1|2|G|861
*
8BF7|1|2|C|868
8BF7|1|2|G|869
8BF7|1|2|U|870
8BF7|1|2|U|871
8BF7|1|2|A|872
8BF7|1|2|A|873
8BF7|1|2|G|874

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain f

30S ribosomal protein S2

Chain l

30S ribosomal protein S8

Chain y

30S ribosomal protein S21