J3_8BGE_010

3D structure

PDB id

8BGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8BGE|1|2|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BGE_010 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1015

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8BGE|1|2|C|826
8BGE|1|2|U|827
8BGE|1|2|U|828
8BGE|1|2|G|829
*
8BGE|1|2|C|857
8BGE|1|2|G|858
8BGE|1|2|G|859
8BGE|1|2|A|860
8BGE|1|2|G|861
*
8BGE|1|2|C|868
8BGE|1|2|G|869
8BGE|1|2|U|870
8BGE|1|2|U|871
8BGE|1|2|A|872
8BGE|1|2|A|873
8BGE|1|2|G|874

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain f

30S ribosomal protein S2

Chain l

30S ribosomal protein S8

Chain y

30S ribosomal protein S21