J3_8BGH_010

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8BGH|1|2|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BGH_010 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.127

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8BGH|1|2|C|826
8BGH|1|2|U|827
8BGH|1|2|U|828
8BGH|1|2|G|829
*
8BGH|1|2|C|857
8BGH|1|2|G|858
8BGH|1|2|G|859
8BGH|1|2|A|860
8BGH|1|2|G|861
*
8BGH|1|2|C|868
8BGH|1|2|G|869
8BGH|1|2|U|870
8BGH|1|2|U|871
8BGH|1|2|A|872
8BGH|1|2|A|873
8BGH|1|2|G|874

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain f

30S ribosomal protein S2

Chain l

30S ribosomal protein S8

Chain y

30S ribosomal protein S21