J3_8BH4_003
3D structure
- PDB id
- 8BH4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- CGGAAG*CAG*CAAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BH4_003 not in the Motif Atlas
- Homologous match to J3_5J7L_041
- Geometric discrepancy: 0.1057
- The information below is about J3_5J7L_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32852.6
- Basepair signature
- cWW-tSH-F-F-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8BH4|1|0|C|1298
8BH4|1|0|G|1299
8BH4|1|0|G|1300
8BH4|1|0|A|1301
8BH4|1|0|A|1302
8BH4|1|0|G|1303
*
8BH4|1|0|C|1625
8BH4|1|0|A|1626
8BH4|1|0|G|1627
*
8BH4|1|0|C|1639
8BH4|1|0|A|1640
8BH4|1|0|A|1641
8BH4|1|0|G|1642
Current chains
- Chain 0
- 23S rRNA RRLG-RRNA
Nearby chains
No other chains within 10ÅColoring options: