J3_8BH4_006
3D structure
- PDB id
- 8BH4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- CUA*UAG*CAUAAG
- Length
- 12 nucleotides
- Bulged bases
- 8BH4|1|0|U|2334
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BH4_006 not in the Motif Atlas
- Homologous match to J3_5J7L_045
- Geometric discrepancy: 0.169
- The information below is about J3_5J7L_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_61124.2
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BH4|1|0|C|2295
8BH4|1|0|U|2296
8BH4|1|0|A|2297
*
8BH4|1|0|U|2321
8BH4|1|0|A|2322
8BH4|1|0|G|2323
*
8BH4|1|0|C|2332
8BH4|1|0|A|2333
8BH4|1|0|U|2334
8BH4|1|0|A|2335
8BH4|1|0|A|2336
8BH4|1|0|G|2337
Current chains
- Chain 0
- 23S rRNA RRLG-RRNA
Nearby chains
- Chain 1
- 5S ribosomal RNA; 5S rRNA
- Chain D
- 50S ribosomal protein L5
- Chain L
- 50S ribosomal protein L18
- Chain T
- 50S ribosomal protein L27
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