J3_8BH4_010

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8BH4|1|2|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BH4_010 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1343

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8BH4|1|2|C|826
8BH4|1|2|U|827
8BH4|1|2|U|828
8BH4|1|2|G|829
*
8BH4|1|2|C|857
8BH4|1|2|G|858
8BH4|1|2|G|859
8BH4|1|2|A|860
8BH4|1|2|G|861
*
8BH4|1|2|C|868
8BH4|1|2|G|869
8BH4|1|2|U|870
8BH4|1|2|U|871
8BH4|1|2|A|872
8BH4|1|2|A|873
8BH4|1|2|G|874

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain f

30S ribosomal protein S2

Chain l

30S ribosomal protein S8

Chain y

30S ribosomal protein S21