J3_8BHF_001

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

8BHF|1|A2|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BHF|1|A2|C|112
8BHF|1|A2|A|113
8BHF|1|A2|G|114
8BHF|1|A2|C|115
8BHF|1|A2|G|116
*
8BHF|1|A2|C|155
8BHF|1|A2|G|156
8BHF|1|A2|U|157
8BHF|1|A2|A|158
8BHF|1|A2|C|159
8BHF|1|A2|G|160
*
8BHF|1|A2|C|275
8BHF|1|A2|C|276
8BHF|1|A2|G|277
8BHF|1|A2|G|278

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A1

Ribosomal protein L15

Chain U1

60S ribosomal protein L35

Chain V1

60S ribosomal protein L36

Chain p3

60S ribosomal protein L7a

Chain t3

60S ribosomal protein L13