J3_8BHF_004
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCAG*CGUAG*UCCGAC
- Length
- 15 nucleotides
- Bulged bases
- 8BHF|1|A2|A|1613
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BHF_004 not in the Motif Atlas
- Homologous match to J3_5TBW_005
- Geometric discrepancy: 0.1648
- The information below is about J3_5TBW_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_33851.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
8BHF|1|A2|G|1545
8BHF|1|A2|C|1546
8BHF|1|A2|A|1547
8BHF|1|A2|G|1548
*
8BHF|1|A2|C|1580
8BHF|1|A2|G|1581
8BHF|1|A2|U|1582
8BHF|1|A2|A|1583
8BHF|1|A2|G|1584
*
8BHF|1|A2|U|1609
8BHF|1|A2|C|1610
8BHF|1|A2|C|1611
8BHF|1|A2|G|1612
8BHF|1|A2|A|1613
8BHF|1|A2|C|1614
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain E1
- Ribosomal protein L19
- Chain T1
- 60S ribosomal protein L34
- Chain c1
- 60S ribosomal protein L37a
- Chain j3
- 60S ribosomal protein L8
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