J3_8BHF_005

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAU*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BHF_005 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.3332

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

8BHF|1|A2|G|1969
8BHF|1|A2|A|1970
8BHF|1|A2|U|1971
*
8BHF|1|A2|G|1995
8BHF|1|A2|C|1996
8BHF|1|A2|U|1997
8BHF|1|A2|A|1998
8BHF|1|A2|A|1999
8BHF|1|A2|G|2000
8BHF|1|A2|G|2001
*
8BHF|1|A2|C|2016
8BHF|1|A2|A|2017
8BHF|1|A2|C|2018

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain e1

60S acidic ribosomal protein P0

Chain f1

60S ribosomal protein L12