J3_8BHF_006

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

8BHF|1|A2|A|2399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BHF_006 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.0809

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

8BHF|1|A2|C|2396
8BHF|1|A2|G|2397
8BHF|1|A2|A|2398
8BHF|1|A2|A|2399
8BHF|1|A2|G|2400
8BHF|1|A2|U|2401
8BHF|1|A2|G|2402
*
8BHF|1|A2|C|2808
8BHF|1|A2|A|2809
8BHF|1|A2|A|2810
*
8BHF|1|A2|U|2822
8BHF|1|A2|C|2823
8BHF|1|A2|U|2824
8BHF|1|A2|G|2825

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain E1

Ribosomal protein L19

Chain T1

60S ribosomal protein L34