J3_8BHF_008

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

8BHF|1|A2|U|2766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BHF|1|A2|A|2554
8BHF|1|A2|G|2555
8BHF|1|A2|A|2556
8BHF|1|A2|U|2557
8BHF|1|A2|G|2558
*
8BHF|1|A2|C|2575
8BHF|1|A2|A|2576
8BHF|1|A2|G|2577
8BHF|1|A2|U|2578
*
8BHF|1|A2|A|2760
8BHF|1|A2|G|2761
8BHF|1|A2|G|2762
8BHF|1|A2|G|2763
8BHF|1|A2|U|2764
8BHF|1|A2|G|2765
8BHF|1|A2|U|2766
8BHF|1|A2|A|2767
8BHF|1|A2|A|2768
8BHF|1|A2|A|2769
8BHF|1|A2|U|2770

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain M1

60S ribosomal protein L27