J3_8BHF_018
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BHF_018 not in the Motif Atlas
- Homologous match to J3_4V88_036
- Geometric discrepancy: 0.1096
- The information below is about J3_4V88_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.2
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8BHF|1|A3|U|1225
8BHF|1|A3|G|1226
8BHF|1|A3|G|1227
8BHF|1|A3|A|1228
*
8BHF|1|A3|U|1530
8BHF|1|A3|A|1531
8BHF|1|A3|C|1532
*
8BHF|1|A3|G|1638
8BHF|1|A3|G|1639
8BHF|1|A3|A|1640
8BHF|1|A3|A|1641
Current chains
- Chain A3
- 18S ribosomal RNA
Nearby chains
- Chain 21
- Transfer RNA; tRNA
- Chain G3
- Ribosomal protein S5
- Chain R3
- Ribosomal protein S16
- Chain T3
- 40S ribosomal protein S18
- Chain U3
- 40S ribosomal protein S19
- Chain n1
- CCR4-NOT transcription complex subunit 3
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