J3_8BHF_025
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 8BHF|1|A2|U|354, 8BHF|1|A2|A|362, 8BHF|1|C2|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BHF_025 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0629
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
8BHF|1|A2|C|351
8BHF|1|A2|G|352
8BHF|1|A2|A|353
8BHF|1|A2|U|354
8BHF|1|A2|A|355
8BHF|1|A2|G|356
8BHF|1|A2|U|357
8BHF|1|A2|C|358
8BHF|1|A2|A|359
8BHF|1|A2|A|360
8BHF|1|A2|C|361
8BHF|1|A2|A|362
8BHF|1|A2|A|363
8BHF|1|A2|G|364
8BHF|1|A2|U|365
8BHF|1|A2|A|366
8BHF|1|A2|C|367
*
8BHF|1|A2|G|374
8BHF|1|A2|G|375
8BHF|1|A2|A|376
8BHF|1|A2|A|377
8BHF|1|A2|A|378
8BHF|1|A2|G|379
*
8BHF|1|C2|C|21
8BHF|1|C2|U|22
8BHF|1|C2|C|23
8BHF|1|C2|G|24
Current chains
- Chain A2
- 28S ribosomal RNA
- Chain C2
- 5.8S ribosomal RNA
Nearby chains
- Chain L1
- Ribosomal protein L26
- Chain W1
- Ribosomal protein L37
- Chain Y1
- 60S ribosomal protein L39-like
- Chain l3
- 60S ribosomal protein L4
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