J3_8BHF_029

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

8BHF|1|A2|A|1805, 8BHF|1|A2|U|1834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BHF_029 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.4415

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84137.1

Basepair signature

cWW-cWW-cHW-F-cSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8BHF|1|A2|U|1726
8BHF|1|A2|U|1727
*
8BHF|1|A2|A|1802
8BHF|1|A2|G|1803
8BHF|1|A2|A|1804
8BHF|1|A2|A|1805
8BHF|1|A2|G|1806
*
8BHF|1|A2|C|1832
8BHF|1|A2|G|1833
8BHF|1|A2|U|1834
8BHF|1|A2|G|1835
8BHF|1|A2|G|1836
8BHF|1|A2|A|1837

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain G1

60S ribosomal protein L21

Chain O1

60S ribosomal protein L29

Chain o3

60S ribosomal protein L7