J3_8BHF_031
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCGGUC*GGAGU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BHF_031 not in the Motif Atlas
- Homologous match to J3_8C3A_052
- Geometric discrepancy: 0.1452
- The information below is about J3_8C3A_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_70383.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
8BHF|1|A2|U|2443
8BHF|1|A2|C|2444
8BHF|1|A2|G|2445
8BHF|1|A2|G|2446
8BHF|1|A2|U|2447
8BHF|1|A2|C|2448
*
8BHF|1|A2|G|2518
8BHF|1|A2|G|2519
8BHF|1|A2|A|2520
8BHF|1|A2|G|2521
8BHF|1|A2|U|2522
*
8BHF|1|A2|A|2539
8BHF|1|A2|A|2540
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain K1
- Ribosomal protein L23/L25 N-terminal domain-containing protein
- Chain T1
- 60S ribosomal protein L34
- Chain X1
- 60S ribosomal protein L38
- Chain Y1
- 60S ribosomal protein L39-like
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