J3_8BHF_034

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BHF_034 not in the Motif Atlas

Homologous match to J3_8C3A_055

Geometric discrepancy: 0.1534

The information below is about J3_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10980.1

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8BHF|1|A2|A|2601
8BHF|1|A2|G|2602
8BHF|1|A2|A|2603
8BHF|1|A2|A|2604
8BHF|1|A2|G|2605
*
8BHF|1|A2|C|2740
8BHF|1|A2|C|2741
*
8BHF|1|A2|G|2745
8BHF|1|A2|A|2746
8BHF|1|A2|A|2747
8BHF|1|A2|A|2748
8BHF|1|A2|A|2749
8BHF|1|A2|U|2750

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain T1

60S ribosomal protein L34

Chain c1

60S ribosomal protein L37a

Chain j3

60S ribosomal protein L8