J3_8BHF_035
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUC*GCCUCACGAUCC*GGUGUC
- Length
- 21 nucleotides
- Bulged bases
- 8BHF|1|A2|U|4360
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BHF_035 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0821
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8BHF|1|A2|G|4214
8BHF|1|A2|U|4215
8BHF|1|A2|C|4216
*
8BHF|1|A2|G|4317
8BHF|1|A2|C|4318
8BHF|1|A2|C|4319
8BHF|1|A2|U|4320
8BHF|1|A2|C|4321
8BHF|1|A2|A|4322
8BHF|1|A2|C|4323
8BHF|1|A2|G|4324
8BHF|1|A2|A|4325
8BHF|1|A2|U|4326
8BHF|1|A2|C|4327
8BHF|1|A2|C|4328
*
8BHF|1|A2|G|4356
8BHF|1|A2|G|4357
8BHF|1|A2|U|4358
8BHF|1|A2|G|4359
8BHF|1|A2|U|4360
8BHF|1|A2|C|4361
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain D1
- Ribosomal protein L18
- Chain G1
- 60S ribosomal protein L21
- Chain N1
- 60S ribosomal protein L27a
- Chain b1
- Ribosomal protein L36a like
- Chain n1
- CCR4-NOT transcription complex subunit 3
Coloring options: