J3_8BHF_037

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BHF_037 not in the Motif Atlas

Geometric match to J3_8C3A_082

Geometric discrepancy: 0.0776

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

8BHF|1|A3|A|40
8BHF|1|A3|G|41
*
8BHF|1|A3|C|481
8BHF|1|A3|G|482
8BHF|1|A3|C|483
8BHF|1|A3|A|484
8BHF|1|A3|A|485
8BHF|1|A3|A|486
8BHF|1|A3|U|487
*
8BHF|1|A3|A|512
8BHF|1|A3|G|513
8BHF|1|A3|U|514

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain K3

Ribosomal protein S9 (Predicted)

Chain Y3

Ribosomal protein S23