J3_8BHF_041

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BHF_041 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.0986

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8BHF|1|A3|U|1350
8BHF|1|A3|G|1351
*
8BHF|1|A3|U|1360
8BHF|1|A3|G|1361
8BHF|1|A3|U|1362
8BHF|1|A3|C|1363
*
8BHF|1|A3|G|1375
8BHF|1|A3|A|1376
8BHF|1|A3|U|1377
8BHF|1|A3|A|1378
8BHF|1|A3|A|1379

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain B3

40S_SA_C domain-containing protein

Chain D3

40S ribosomal protein S2

Chain S3

40S ribosomal protein S17