J3_8BHJ_029

3D structure

PDB id

8BHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

8BHJ|1|2|C|48, 8BHJ|1|2|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BHJ_029 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.1442

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8BHJ|1|2|G|46
8BHJ|1|2|C|47
8BHJ|1|2|C|48
8BHJ|1|2|U|49
8BHJ|1|2|A|50
8BHJ|1|2|A|51
8BHJ|1|2|C|52
*
8BHJ|1|2|G|359
8BHJ|1|2|G|360
8BHJ|1|2|G|361
8BHJ|1|2|G|362
8BHJ|1|2|A|363
8BHJ|1|2|A|364
8BHJ|1|2|U|365
8BHJ|1|2|A|366
8BHJ|1|2|U|367
*
8BHJ|1|2|A|393
8BHJ|1|2|G|394
8BHJ|1|2|C|395

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain p

30S ribosomal protein S12

Chain t

30S ribosomal protein S16