J3_8BHL_018

3D structure

PDB id

8BHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

8BHL|1|0|A|504, 8BHL|1|0|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BHL_018 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1704

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

8BHL|1|0|G|30
8BHL|1|0|C|31
*
8BHL|1|0|G|474
8BHL|1|0|C|475
8BHL|1|0|G|476
8BHL|1|0|A|477
8BHL|1|0|A|478
8BHL|1|0|A|479
8BHL|1|0|A|480
8BHL|1|0|G|481
8BHL|1|0|A|482
8BHL|1|0|A|483
8BHL|1|0|C|484
*
8BHL|1|0|G|496
8BHL|1|0|A|497
8BHL|1|0|G|498
8BHL|1|0|U|499
8BHL|1|0|G|500
8BHL|1|0|A|501
8BHL|1|0|A|502
8BHL|1|0|A|503
8BHL|1|0|A|504
8BHL|1|0|A|505
8BHL|1|0|G|506
8BHL|1|0|A|507
8BHL|1|0|A|508
8BHL|1|0|C|509
8BHL|1|0|C|510

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L24