J3_8BHN_017

3D structure

PDB id

8BHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

8BHN|1|0|A|504, 8BHN|1|0|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BHN_017 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1448

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8BHN|1|0|G|30
8BHN|1|0|C|31
*
8BHN|1|0|G|474
8BHN|1|0|C|475
8BHN|1|0|G|476
8BHN|1|0|A|477
8BHN|1|0|A|478
8BHN|1|0|A|479
8BHN|1|0|A|480
8BHN|1|0|G|481
8BHN|1|0|A|482
8BHN|1|0|A|483
8BHN|1|0|C|484
*
8BHN|1|0|G|496
8BHN|1|0|A|497
8BHN|1|0|G|498
8BHN|1|0|U|499
8BHN|1|0|G|500
8BHN|1|0|A|501
8BHN|1|0|A|502
8BHN|1|0|A|503
8BHN|1|0|A|504
8BHN|1|0|A|505
8BHN|1|0|G|506
8BHN|1|0|A|507
8BHN|1|0|A|508
8BHN|1|0|C|509
8BHN|1|0|C|510

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L24