J3_8BHP_019

3D structure

PDB id

8BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

8BHP|1|0|A|504, 8BHP|1|0|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BHP_019 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1676

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8BHP|1|0|G|30
8BHP|1|0|C|31
*
8BHP|1|0|G|474
8BHP|1|0|C|475
8BHP|1|0|G|476
8BHP|1|0|A|477
8BHP|1|0|A|478
8BHP|1|0|A|479
8BHP|1|0|A|480
8BHP|1|0|G|481
8BHP|1|0|A|482
8BHP|1|0|A|483
8BHP|1|0|C|484
*
8BHP|1|0|G|496
8BHP|1|0|A|497
8BHP|1|0|G|498
8BHP|1|0|U|499
8BHP|1|0|G|500
8BHP|1|0|A|501
8BHP|1|0|A|502
8BHP|1|0|A|503
8BHP|1|0|A|504
8BHP|1|0|A|505
8BHP|1|0|G|506
8BHP|1|0|A|507
8BHP|1|0|A|508
8BHP|1|0|C|509
8BHP|1|0|C|510

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L24