3D structure

PDB id
8BHP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation
Experimental method
ELECTRON MICROSCOPY
Resolution
2.37 Å

Loop

Sequence
GCCUAAC*GGGGAAUAU*AGC
Length
19 nucleotides
Bulged bases
8BHP|1|2|C|48, 8BHP|1|2|A|51
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8BHP_029 not in the Motif Atlas
Homologous match to J3_5J7L_050
Geometric discrepancy: 0.1267
The information below is about J3_5J7L_050
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46317.4
Basepair signature
cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8BHP|1|2|G|46
8BHP|1|2|C|47
8BHP|1|2|C|48
8BHP|1|2|U|49
8BHP|1|2|A|50
8BHP|1|2|A|51
8BHP|1|2|C|52
*
8BHP|1|2|G|359
8BHP|1|2|G|360
8BHP|1|2|G|361
8BHP|1|2|G|362
8BHP|1|2|A|363
8BHP|1|2|A|364
8BHP|1|2|U|365
8BHP|1|2|A|366
8BHP|1|2|U|367
*
8BHP|1|2|A|393
8BHP|1|2|G|394
8BHP|1|2|C|395

Current chains

Chain 2
16S rRNA RRSB-RRNA

Nearby chains

Chain p
30S ribosomal protein S12
Chain t
30S ribosomal protein S16

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1825 s