J3_8BIL_010

3D structure

PDB id

8BIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8BIL|1|2|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BIL_010 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1011

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8BIL|1|2|C|826
8BIL|1|2|U|827
8BIL|1|2|U|828
8BIL|1|2|G|829
*
8BIL|1|2|C|857
8BIL|1|2|G|858
8BIL|1|2|G|859
8BIL|1|2|A|860
8BIL|1|2|G|861
*
8BIL|1|2|C|868
8BIL|1|2|G|869
8BIL|1|2|U|870
8BIL|1|2|U|871
8BIL|1|2|A|872
8BIL|1|2|A|873
8BIL|1|2|G|874

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain f

30S ribosomal protein S2

Chain l

30S ribosomal protein S8

Chain y

30S ribosomal protein S21