J3_8BIM_004

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8BIM|1|0|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BIM_004 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1117

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

8BIM|1|0|C|1306
8BIM|1|0|A|1307
8BIM|1|0|A|1308
8BIM|1|0|G|1309
*
8BIM|1|0|C|1605
8BIM|1|0|C|1606
8BIM|1|0|C|1607
8BIM|1|0|A|1608
8BIM|1|0|A|1609
8BIM|1|0|A|1610
8BIM|1|0|C|1611
*
8BIM|1|0|G|1620
8BIM|1|0|U|1621
8BIM|1|0|G|1622

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain c

50S ribosomal protein L34