J3_8BIM_010

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8BIM|1|2|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BIM_010 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0992

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8BIM|1|2|C|826
8BIM|1|2|U|827
8BIM|1|2|U|828
8BIM|1|2|G|829
*
8BIM|1|2|C|857
8BIM|1|2|G|858
8BIM|1|2|G|859
8BIM|1|2|A|860
8BIM|1|2|G|861
*
8BIM|1|2|C|868
8BIM|1|2|G|869
8BIM|1|2|U|870
8BIM|1|2|U|871
8BIM|1|2|A|872
8BIM|1|2|A|873
8BIM|1|2|G|874

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain f

30S ribosomal protein S2

Chain l

30S ribosomal protein S8

Chain y

30S ribosomal protein S21