J3_8BIM_018

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

8BIM|1|0|A|504, 8BIM|1|0|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BIM_018 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1582

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

8BIM|1|0|G|30
8BIM|1|0|C|31
*
8BIM|1|0|G|474
8BIM|1|0|C|475
8BIM|1|0|G|476
8BIM|1|0|A|477
8BIM|1|0|A|478
8BIM|1|0|A|479
8BIM|1|0|A|480
8BIM|1|0|G|481
8BIM|1|0|A|482
8BIM|1|0|A|483
8BIM|1|0|C|484
*
8BIM|1|0|G|496
8BIM|1|0|A|497
8BIM|1|0|G|498
8BIM|1|0|U|499
8BIM|1|0|G|500
8BIM|1|0|A|501
8BIM|1|0|A|502
8BIM|1|0|A|503
8BIM|1|0|A|504
8BIM|1|0|A|505
8BIM|1|0|G|506
8BIM|1|0|A|507
8BIM|1|0|A|508
8BIM|1|0|C|509
8BIM|1|0|C|510

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L24