J3_8BIM_028

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

8BIM|1|2|C|48, 8BIM|1|2|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BIM_028 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.1186

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8BIM|1|2|G|46
8BIM|1|2|C|47
8BIM|1|2|C|48
8BIM|1|2|U|49
8BIM|1|2|A|50
8BIM|1|2|A|51
8BIM|1|2|C|52
*
8BIM|1|2|G|359
8BIM|1|2|G|360
8BIM|1|2|G|361
8BIM|1|2|G|362
8BIM|1|2|A|363
8BIM|1|2|A|364
8BIM|1|2|U|365
8BIM|1|2|A|366
8BIM|1|2|U|367
*
8BIM|1|2|A|393
8BIM|1|2|G|394
8BIM|1|2|C|395

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain p

30S ribosomal protein S12

Chain t

30S ribosomal protein S16