J3_8BN3_002
3D structure
- PDB id
- 8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S, ES7s delta, eIF5A, Stm1 containing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 8BN3|1|1|A|817, 8BN3|1|1|G|924
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BN3_002 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.0538
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BN3|1|1|U|814
8BN3|1|1|G|815
8BN3|1|1|A|816
8BN3|1|1|A|817
8BN3|1|1|C|818
8BN3|1|1|U|819
8BN3|1|1|A|820
*
8BN3|1|1|U|905
8BN3|1|1|A|906
8BN3|1|1|G|907
*
8BN3|1|1|C|923
8BN3|1|1|G|924
8BN3|1|1|A|925
8BN3|1|1|A|926
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L2
- 60S ribosomal protein L2-A
- Chain M5
- Ribosomal protein L15
- Chain O7
- Large ribosomal subunit protein eL37A
- Chain O9
- 60S ribosomal protein L39
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