J3_8BN3_004
3D structure
- PDB id
- 8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S, ES7s delta, eIF5A, Stm1 containing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UGAAGUG*CAA*UCUA
- Length
- 14 nucleotides
- Bulged bases
- 8BN3|1|1|A|1482
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BN3_004 not in the Motif Atlas
- Homologous match to J3_5TBW_008
- Geometric discrepancy: 0.0726
- The information below is about J3_5TBW_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_10154.2
- Basepair signature
- cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F
- Number of instances in this motif group
- 3
Unit IDs
8BN3|1|1|U|1479
8BN3|1|1|G|1480
8BN3|1|1|A|1481
8BN3|1|1|A|1482
8BN3|1|1|G|1483
8BN3|1|1|U|1484
8BN3|1|1|G|1485
*
8BN3|1|1|C|1857
8BN3|1|1|A|1858
8BN3|1|1|A|1859
*
8BN3|1|1|U|1871
8BN3|1|1|C|1872
8BN3|1|1|U|1873
8BN3|1|1|A|1874
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain M9
- 60S ribosomal protein L19-A
- Chain O4
- Large ribosomal subunit protein eL34A
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