3D structure

PDB id
8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S, ES7s delta, eIF5A, Stm1 containing
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
UAUC*GUU*ACUAAUA
Length
14 nucleotides
Bulged bases
8BN3|1|1|A|2887, 8BN3|1|1|U|2888
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8BN3_009 not in the Motif Atlas
Homologous match to J3_5TBW_014
Geometric discrepancy: 0.0563
The information below is about J3_5TBW_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_98597.1
Basepair signature
cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
Number of instances in this motif group
2

Unit IDs

8BN3|1|1|U|2886
8BN3|1|1|A|2887
8BN3|1|1|U|2888
8BN3|1|1|C|2889
*
8BN3|1|1|G|2914
8BN3|1|1|U|2915
8BN3|1|1|U|2916
*
8BN3|1|1|A|2930
8BN3|1|1|C|2931
8BN3|1|1|U|2932
8BN3|1|1|A|2933
8BN3|1|1|A|2934
8BN3|1|1|U|2935
8BN3|1|1|A|2936

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain L3
60S ribosomal protein L3
Chain M6
60S ribosomal protein L16-A
Chain N3
60S ribosomal protein L23-A

Coloring options:


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