J3_8BN3_011

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGAG*CAG*UCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BN3_011 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.0768

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

8BN3|1|2|A|760
8BN3|1|2|G|761
8BN3|1|2|A|762
8BN3|1|2|G|763
*
8BN3|1|2|C|773
8BN3|1|2|A|774
8BN3|1|2|G|775
*
8BN3|1|2|U|785
8BN3|1|2|C|786
8BN3|1|2|G|787
8BN3|1|2|A|788
8BN3|1|2|A|789
8BN3|1|2|U|790

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D4

40S ribosomal protein S24-A

Chain S4

Small ribosomal subunit protein eS4A

Chain S9

Small ribosomal subunit protein uS4A