J3_8BN3_017

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

8BN3|1|2|A|1204, 8BN3|1|2|G|1432, 8BN3|1|2|C|1434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BN3_017 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1241

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8BN3|1|2|C|1202
8BN3|1|2|C|1203
8BN3|1|2|A|1204
8BN3|1|2|G|1205
8BN3|1|2|A|1206
8BN3|1|2|C|1207
*
8BN3|1|2|G|1250
8BN3|1|2|G|1251
8BN3|1|2|G|1252
8BN3|1|2|U|1253
8BN3|1|2|G|1254
*
8BN3|1|2|U|1429
8BN3|1|2|U|1430
8BN3|1|2|A|1431
8BN3|1|2|G|1432
8BN3|1|2|A|1433
8BN3|1|2|C|1434
8BN3|1|2|G|1435

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C0

Small ribosomal subunit protein eS10A

Chain D9

RPS29A isoform 1